Preserve local paths for desktop saves (#5543)

# Summary

- Adds desktop file tracking: local paths are preserved and save buttons
now work as expcted (doing Save/Save As as appropriate)
- Adds logic to track whether files are 'dirty' (they've been modified
by some tool, and not saved to disk yet).
- Improves file state UX (dirty vs saved) and close warnings
- Web behaviour should be unaffected by these changes

## Indicators
Files now have indicators in desktop mode to tell you their state.

### File up-to-date with disk

<img width="318" height="393" alt="image"
src="https://github.com/user-attachments/assets/06325f9a-afd7-4c2f-8a5b-6d11e3093115"
/>

### File modified by a tool but not saved to disk yet

<img width="357" height="385" alt="image"
src="https://github.com/user-attachments/assets/1a7716d9-c6f7-4d13-be0d-c1de6493954b"
/>

### File not tracked on disk

<img width="312" height="379" alt="image"
src="https://github.com/user-attachments/assets/9cffe300-bd9a-4e19-97c7-9b98bebefacc"
/>

# Limitations
- It's a bit weird that we still have files stored in indexeddb in the
app, which are still loadable. We might want to change this behaviour in
the future
- Viewer's Save doesn't persist to disk. I've left that out here because
it'd need a lot of testing to make sure the logic's right with making
sure you can leave the Viewer with applying the changes to the PDF
_without_ saving to disk
- There's no current way to do Save As on a file that has already been
persisted to disk - it's only ever Save. Similarly, there's no way to
duplicate a file.

---------

Co-authored-by: James Brunton <[email protected]>
Co-authored-by: James Brunton <[email protected]>

frontend/src-tauri/Cargo.lock

@@ -907,6 +907,8 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "89a09f22a6c6069a18470eb92d2298acf25463f14256d24778e1230d789a2aec"
 dependencies = [
  "bitflags 2.10.0",
+ "block2",
+ "libc",
  "objc2",
 ]
 
@@ -3531,6 +3533,30 @@ dependencies = [
  "webpki-roots 1.0.5",
 ]
 
+[[package]]
+name = "rfd"
+version = "0.16.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a15ad77d9e70a92437d8f74c35d99b4e4691128df018833e99f90bcd36152672"
+dependencies = [
+ "block2",
+ "dispatch2",
+ "glib-sys",
+ "gobject-sys",
+ "gtk-sys",
+ "js-sys",
+ "log",
+ "objc2",
+ "objc2-app-kit",
+ "objc2-core-foundation",
+ "objc2-foundation",
+ "raw-window-handle",
+ "wasm-bindgen",
+ "wasm-bindgen-futures",
+ "web-sys",
+ "windows-sys 0.60.2",
+]
+
 [[package]]
 name = "ring"
 version = "0.17.14"
@@ -4229,6 +4255,7 @@ dependencies = [
  "tauri",
  "tauri-build",
  "tauri-plugin-deep-link",
+ "tauri-plugin-dialog",
  "tauri-plugin-fs",
  "tauri-plugin-http",
  "tauri-plugin-log",
@@ -4609,6 +4636,24 @@ dependencies = [
  "windows-result 0.3.4",
 ]
 
+[[package]]
+name = "tauri-plugin-dialog"
+version = "2.6.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "9204b425d9be8d12aa60c2a83a289cf7d1caae40f57f336ed1155b3a5c0e359b"
+dependencies = [
+ "log",
+ "raw-window-handle",
+ "rfd",
+ "serde",
+ "serde_json",
+ "tauri",
+ "tauri-plugin",
+ "tauri-plugin-fs",
+ "thiserror 2.0.18",
+ "url",
+]
+
 [[package]]
 name = "tauri-plugin-fs"
 version = "2.4.5"